ironrock offroad sells JK rubi axles complete with bracket kits, etc, that bold right into the WJ.
the front axle should swap right in. the rear won't; WJs us a wishbone suspension out back to get rid of the track bar, and i dont' think the JKs do. think they have trackbars still.
either way you are gonna look at some expensive upgrades (buying the axles from IRO or paying someone to do it) or a lot of man hours to make it work. personally i think it'll be pretty cool.
but if you're stickin with 35s, you could make the D44 work for you with a truss gears and aussie lockers. alloy usa makes chromo's for it too. either way your lookin at big bux.
good luck with your build!