I would look at Vanco's big brakes for the front, unless you want to do the cross over steering mod that comes with doing WJ's.
By the time you nickle and dime a wj swap, the vanco should easily be paid for.
You wont notice a huge difference on road with rear disks, but off road it can make a significant difference.
Pointing up hill with most of your weight transfered to the rear, drums are reluctant to hold your vehicle in place. With wet mud filled drums they are nearly non existent. Disks eliminate that hassle.
On road rear disks improve maintenance, and cost. Drums can nickle and dime you to death and are a serious PITA.
The caliper brackets are a direct bolt on replacement regardless of what d35 they come off of. The only time the caliper bracket has issue is fitting a d35 bracket on a d44. The bearing opening on the 35 bracket is to small, and the d44 bearing and seal doesnt fit into it. Easily remedied by reaming out the bracket a small amount, or just buying stock rubicon brackets.
HTH
p.s. rubicon and ZJ rear calipers are completely interchangeable, but rubi calipers are bit beefier, and nearly double the price. May not be an issue with your discount. I still havnt tried it, but from from first glance, I also think 8.8's use identical brake parts as well. I think 8.8 would be the cheapest of the 3, but need a chance to try them out.
I've never bothered with master cylinder, or prop valvle changes with these swaps and braking seems even. Last I heard, 4 disk rubi prop valves are the same part number as older tj's with disk drum combo's.