For a better leaf ride look into a soft spring. Call and get spring rates from BDS, OME, and or Alcan.
Ignore RE if you want a soft ride, they run a very stiff spring.
BDS is very soft spring.
For shocks, either looked at really well broken in oils like R5000's, or a soft gas like an OME. Anything fancier then those are going to run into big $.
Keep you track bars and swar bars if you are more concerned with ride then offroad performance.
Consider a shackle reversal on the front axle. That will smooth out the bumps a bit, and tend to bump wander less while driving down the road.
Get C load range tires for softer side walls and ride.
Use rubber bushings on everything. Shackles, track bars, swaybars, shocks, etc etc. Poly last longer but will stiffen up the ride considerably.
Done right, leafs can be set up to ride quit nicely. I have a CJ in my garage right now that the original owner set to ride as smooth as any stock TJ I have ever riddin in.
BDS leafs, very worn in generic Skyjacker oil shocks, rubber bushings all the way around. It doesnt handle as well as a TJ, since there are no track bars or sway bars which were ditched for offroad performance, but the ride for leafs is outstanding.
hth, good luck and have fun with your project.
FWIW, if you end up considering coils and links, just go straight to coilovers. All the work involved is not really worth doing it just for stock style coil springs.